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Science! Ask you question here. Biscuits NOT included and answers not guaranteed.

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  • Moderators Posts: 52,030 ✭✭✭✭Delirium


    FYI: This is Option Number Twenty-Five. Isn't this being a bit, uh, mean on the hamsters?
    Obliq wrote: »
    This thread is now fab (ha!).....koth, thanks for the great questions!

    :)

    It just seemed like a wasted opportunity if I didn't throw questions to the folk that seem to have a good understanding of biology and evolution.

    At least they're receptive to answer questions and providing evidence/links to support what they post.

    If you can read this, you're too close!



  • Moderators, Society & Culture Moderators Posts: 24,458 Mod ✭✭✭✭robindch


    FYI: This is Option Number Twenty-Five. Isn't this being a bit, uh, mean on the hamsters?
    robindch wrote: »
    One thread for good stuff, one thread for idiocy and, uh, that should be enough!

    Just to reiterate from earlier on:

    This thread is for evolution, science, biology, physics, engineering and so on.

    That thread over there is for creationists, flat-earthers, holocaust denialism, moon-hoaxers, homeopaths etc, etc, etc, etc.


  • Registered Users, Registered Users 2 Posts: 4,930 ✭✭✭Jimoslimos


    Who's the Hood again?
    Beruthiel wrote: »
    This for instance:

    intergenic 18674 rs10195681 A or C CC

    Does the above make sense to you Sarky?
    Just to add on what Sarky has said, I don't think it relates to a codon (ACC or CCC) since it is located in a non-coding region rather more likely that you've two copies of C in that position, one on each chromosome.


  • Moderators Posts: 52,030 ✭✭✭✭Delirium


    FYI: This is Option Number Twenty-Five. Isn't this being a bit, uh, mean on the hamsters?
    oldrnwisr wrote: »
    Hallelujah, at last we have some sensible questions to discuss.

    I would agree with Robin in that mutation is constantly happening but is also something which is affected by enviromental factors.

    Our current estimate of mutation rate suggests that each child is born with about 128 mutations compared to the genomes of their parents.

    Mutation rates in humans. II. Sporadic mutation-specific rates and rate of detrimental human mutations inferred from hemophilia B.

    We also know that only, at most, about 4 of these 128 mutations are actually deleterious or harmful mutations.

    The X Chromosome and the Rate of Deleterious Mutations in Humans

    with regards to the 4/128 being deleterious or harmful, can the harmful mutations accumulate with each generation? I.e. generationA = 4 harmful, generationB =6, generationC =9? Or are there corrective traits that remove some of the traits before passing on mutations to the next generation?

    If you can read this, you're too close!



  • Closed Accounts Posts: 31,967 ✭✭✭✭Sarky


    OMG! Spoiler!
    Depends on the nature of the mutation. If it interfered with the healthy development of sperm cells for example, it's not a mutation that'll get passed on without medical aid. Others can accumulate, if they're not a serious threat to the health or fertility of the organism. At least, they can accumulate until they start being deleterious to health/fertility. Or until another mutation does something to balance out whatever harm they're doing.

    I'm sure someone with hard data will be along later.


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  • Registered Users, Registered Users 2 Posts: 1,594 ✭✭✭oldrnwisr


    koth wrote: »
    with regards to the 4/128 being deleterious or harmful, can the harmful mutations accumulate with each generation? I.e. generationA = 4 harmful, generationB =6, generationC =9? Or are there corrective traits that remove some of the traits before passing on mutations to the next generation?

    I think there are two different questions at play here.

    Can the deleterious mutations accumulate? Certainly.

    Do they accumulate? Not really.

    To determine whether deleterious mutations will accumulate, a number of factors have to be considered.

    The first factor is artificial selection. In humans this typically presents as consanguineous relationships or inbreeding. Where you have a close degree of consanguinity maintained for a number of generations, the deleterious mutations have no escape route, no way to be weeded out of the genome.
    We also see this kind of mutation accumulation in dogs. Repeated artificial selection of traits which are harmful to the animal itself are quite common in dogs, King Charles spaniels for example.

    The second factor to consider is the degree of detriment that a mutation may cause to the parent organism.
    Take the gene responsible for your blood type. The gene responsible lies near the end of the long arm of chromosome 9. (Long arm by the way refers to the physical structure of the chromosome as seen below)

    486px-Chromosome.svg.png

    The blood type system as we know involves four blood types, A,B,AB and O. The A and B versions of the gene are co-dominant and one copy of each gene will result in blood type AB. Blood type O, however, is the recessive form of the gene and results from a frameshift mutation caused by the deletion of a single base. This single mutation results in the O version of the gene coding for an entirely different protein. The consequences of this in terms of the parent organism is that people with the AB version of the gene have a high resistance to cholera. People with A and B, slightly less resistance and people with O are susceptible. You would imagine, therefore that O would have disappeared from the genome long ago. However, it isn't that straightforward. As it turns out, people with the O version of the gene have a higher resistance to malaria than the others.

    Molecular genetic basis of the histo-blood ABO system

    Of course, current medical technology and other cultural factors must also be taken into account. Take something like haemophilia for example. While this may have contributed to a negative impact on survivability throughout history, such a mutation now would not necessarily affect the lifespan of an affected individual. Similarly, with the decline in large families advantages or disadvantages in fecundity are unlikely to have any actual impact on the number of descendants.

    If you would like a pop-sci primer on the topic I would recommend this:

    Genome: The autobiography of a species in 23 chapters


  • Registered Users, Registered Users 2 Posts: 390 ✭✭sephir0th


    oldrnwisr, will you be on my table quiz team?


  • Registered Users, Registered Users 2 Posts: 16,247 ✭✭✭✭Pherekydes


    FYI: This is Option Number Twenty-Five. Isn't this being a bit, uh, mean on the hamsters?
    sephir0th wrote: »
    oldrnwisr, will you be on my table quiz team?

    Table quiz? Feckin' University Challenge (for oldies). :pac:


  • Moderators, Society & Culture Moderators Posts: 24,458 Mod ✭✭✭✭robindch


    FYI: This is Option Number Twenty-Five. Isn't this being a bit, uh, mean on the hamsters?
    Sarky wrote: »
    There's a research thesis I wrote in the UCC library that deals with the evolution of antibiotics.
    And, thanks to the Iliad Project, helping to develop antibiotics is something that everybody can do in the comfort of their own kitchen:

    http://www.indiegogo.com/projects/help-identify-new-antibiotics-at-home-with-the-iliad-project

    Contributions are welcomed.


  • Closed Accounts Posts: 2,019 ✭✭✭nagirrac


    For those that signed up for it, a reminder that the Coursera Introduction to Genetics and Evolution course starts this week. Week 1 materials are already up on the site with the first assignment coming on Monday.


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  • Registered Users, Registered Users 2 Posts: 12,917 ✭✭✭✭iguana


    I understand the basics of how not completing a course of antibiotics because the bacterial infection they were prescribed for seems better leads to a greater chance of the bacteria mutating into a anti-b resistant strain. But how does taking anti-bs for a non-bacterial infection lead to the same risk? If there are no dangerous bacteria present in the person taking the drugs, how can they mutate? Has it to do with the mutation of the non-harmful bacteria? And is it better or worse to quit a course of anti-bs partway through if they were being taken without cause?


  • Closed Accounts Posts: 31,967 ✭✭✭✭Sarky


    OMG! Spoiler!
    You're full of infection-causing bacteria right now. To cause infection requires the right circumstances, like being in the 'right' part of the body. If you swallowed a pill containing concentrated cold viruses, you wouldn't get a cold because they need to be in the sinuses/airways for that. Same with bacteria.

    So they're still in you, and they'll be affected by antibiotics wherever they are, so the risk of making them resistant remains. Don't take antibiotics unless you have a bacterial infection, and then finish the damn course, and you won't send us back to the hellish age before penicillin was discovered.


  • Closed Accounts Posts: 12,807 ✭✭✭✭Orion


    J C wrote: »
    All you wanted to know (but were afraid to ask) about how the animals fitted on the Ark are answered here:-
    http://www.answersingenesis.org/articles/nab3/how-could-animals-fit-on-ark

    So he only took some of the animals on the ark. The rest of the animals today must have evolved from ... oh wait! ...

    Let me just point on this:
    Current baraminological research suggests ...
    and from the same page:
    Baramin is a term coined by creation scientists

    So creationists invent a science to justify their magic? The whole concept of irony really escapes the devout doesn't it?


  • Registered Users, Registered Users 2 Posts: 26,578 ✭✭✭✭Turtwig


    Orion wrote: »
    So he only took some of the animals on the ark. The rest of the animals today must have evolved from ... oh wait! ...

    Let me just point on this:


    and from the same page:


    So creationists invent a science to justify their magic? The whole concept of irony really escapes the devout doesn't it?

    Ack no! bad Orion. Very bad Orion. No creationism debate in this thread please. Everyone is begging you!


  • Moderators, Society & Culture Moderators Posts: 15,908 Mod ✭✭✭✭smacl


    Could God really stop a Timelord?
    Sarky wrote: »
    You're full of infection-causing bacteria right now.

    I for one most certainly am, coming out my nose they are. I'd guess the bacteria in our house are also becoming highly immune to hot whiskey. The end of the world is nigh!


  • Closed Accounts Posts: 3,232 ✭✭✭Brian Shanahan


    Sarky wrote: »
    You're full of infection-causing bacteria right now. To cause infection requires the right circumstances, like being in the 'right' part of the body. If you swallowed a pill containing concentrated cold viruses, you wouldn't get a cold because they need to be in the sinuses/airways for that. Same with bacteria.

    So they're still in you, and they'll be affected by antibiotics wherever they are, so the risk of making them resistant remains. Don't take antibiotics unless you have a bacterial infection, and then finish the damn course, and you won't send us back to the hellish age before penicillin was discovered.

    Isn't the big problem in antibiotic resistance not human misuse but the fact that they've been used for years in the livestock industries to promote fatter animals for more meat on our plates? I know the EU has banned their use recently, but that a bit of closing the stable doors after the horse has bolted.


  • Closed Accounts Posts: 31,967 ✭✭✭✭Sarky


    OMG! Spoiler!
    A bit, yes. But if there are fewer antibiotics in use everywhere, there's less selective pressure on bacteria to keep the genes conferring resistance, and the problem will eventually reverse itself. Not completely, as we'll still be using antibiotics, but a decent system of rotation should keep the 'superbug' problem to fairly manageable levels.


  • Registered Users, Registered Users 2 Posts: 9,779 ✭✭✭MrPudding


    OMG! Spoiler!
    I hate to be all negative and stuff, but could the poll options be reduced please? It is a bit of a pain when viewing on the phone.

    MrP


  • Closed Accounts Posts: 12,807 ✭✭✭✭Orion


    Jernal wrote: »
    Ack no! bad Orion. Very bad Orion. No creationism debate in this thread please. Everyone is begging you!

    I like it when people beg :D

    Sorry.


  • Registered Users, Registered Users 2 Posts: 26,578 ✭✭✭✭Turtwig


    MrPudding wrote: »
    I hate to be all negative and stuff, but could the poll options be reduced please? It is a bit of a pain when viewing on the phone.

    MrP

    I hate to be inconvenient here but I don't think I can do that without mucking something up. It'd be far easier if you vote on the poll so the pie chart always appear.

    Maybe Dades has more powerz though?


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  • Registered Users, Registered Users 2 Posts: 4,080 ✭✭✭EoghanIRL


    Sarky wrote: »
    You're full of infection-causing bacteria right now. To cause infection requires the right circumstances, like being in the 'right' part of the body. If you swallowed a pill containing concentrated cold viruses, you wouldn't get a cold because they need to be in the sinuses/airways for that. Same with bacteria.

    So they're still in you, and they'll be affected by antibiotics wherever they are, so the risk of making them resistant remains. Don't take antibiotics unless you have a bacterial infection, and then finish the damn course, and you won't send us back to the hellish age before penicillin was discovered.

    You mean I shouldn't take them for my virus :)


  • Registered Users, Registered Users 2 Posts: 26,578 ✭✭✭✭Turtwig


    nagirrac wrote: »
    For those that signed up for it, a reminder that the Coursera Introduction to Genetics and Evolution course starts this week. Week 1 materials are already up on the site with the first assignment coming on Monday.

    Really don't like the lack of immediate feedback on the problem set. How can you actually learn something if you don't know if you're right or wrong? I always it found it best to make errors and learn from why I was making them. Here, I'm left completely in the dark over whether any errors have been made or not. :(


  • Closed Accounts Posts: 2,019 ✭✭✭nagirrac


    Jernal wrote: »
    Really don't like the lack of immediate feedback on the problem set. How can you actually learn something if you don't know if you're right or wrong? I always it found it best to make errors and learn from why I was making them. Here, I'm left completely in the dark over whether any errors have been made or not. :(

    You'll know tomorrow;) I like the fact that you can take the problem sets multiple times, and compare your answers as you go along. I've taken the first set 3 times and the current answers are only the same as the first for 2 problems!

    What I have found so far is you can't rely solely on the lectures, as they are very short and basically an overview. The additional materials, youtube videos etc. are really helpful, and I have also been consulting my daughter's AP Biology textbook (to her endless amusement).


  • Registered Users, Registered Users 2 Posts: 26,578 ✭✭✭✭Turtwig


    Different strokes for different folks I guess. I prefer the problems having instant feedback a limited number of tries and changing between each iteration of a try. So that way you don't even get asked the same question twice. The variant of each question changes in a way to ensure you understand the concepts. :)


  • Registered Users, Registered Users 2 Posts: 26,578 ✭✭✭✭Turtwig


    Wk 3 materials will be available shortly. I have yet to start Wk 2. :o


  • Registered Users, Registered Users 2 Posts: 9,570 ✭✭✭TheChizler


    Where are my biscuits? I WANT BISCUITS DAMMIT!
    Jernal wrote: »
    Wk 3 materials will be available shortly. I have yet to start Wk 2. :o
    Same. Aced the first test, figure I can flunk the rest! :D


  • Registered Users, Registered Users 2 Posts: 26,578 ✭✭✭✭Turtwig


    TheChizler wrote: »
    Same. Aced the first test, figure I can flunk the rest! :D

    Misread one question entirely. Thought it was asking which are not possible. Instead it was asking which were possible. In any case, I would have answered it correctly so not too fussed. Worse thing is, now we're basically in the boat the Week 1 has to be identical to week 2 time wise. Which may not be the case. It may require double the amount of time. Considering that I started week 1 when it began. This doesn't bode well. :o


  • Closed Accounts Posts: 2,019 ✭✭✭nagirrac


    Jernal wrote: »
    Misread one question entirely. Thought it was asking which are not possible. Instead it was asking which were possible. In any case, I would have answered it correctly so not too fussed. Worse thing is, now we're basically in the boat the Week 1 has to be identical to week 2 time wise. Which may not be the case. It may require double the amount of time. Considering that I started week 1 when it began. This doesn't bode well. :o

    Week 2 is a considerable step up from week 1:(. I would say I have put in more than double the time to get to a point where I am satisfied with the problem set, and the problem set is 10 questions this time rather than 6.

    What I have found of great value is the discussion forum and specifically the dialog on the problem sets. If you are stuck for time it is a good source to get an overview of the topics. There are a few posters who pose excellent questions and hints without giving away the answers (and a few others who just give the answers which isn't really helpful).


  • Registered Users, Registered Users 2 Posts: 26,578 ✭✭✭✭Turtwig


    That's what I feared.

    The discussion forums on Coursera are often absolutely fabulous. Part of me wishes I could spend my life reading them. :o


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  • Registered Users, Registered Users 2 Posts: 9,570 ✭✭✭TheChizler


    Where are my biscuits? I WANT BISCUITS DAMMIT!
    Watched the week one lectures in bed, quickly discovered that wouldn't work for week two! It's really sped up.

    Watch out for the possible/not possible questions! It changes randomly if you reattempt the question!


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